This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
Enterovirus
SeqSets
Login
Loculus
Organisms
CCHF (Multi-Ref)
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Enterovirus
Test Dummy Organism
Test organism (with files)
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
Enterovirus
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_001J48A.1
Download
Download FASTA
Download metadata TSV
Russia/LOC_001J48A.1/2025-07-08
O. Kanaeva,
V. Evseeva,
N. Tolstykh,
M. Blokhinova,
K. Antonenkov,
I. Vidyaeva,
A. Khasanova,
E. Klyuchnikova &
D. Naydenov
Pasteur Research Institute of Epidemiology and Microbiology, Saint Petersburg, Laboratory of Etiology and Control of Virus Infections
Sample details
Collection date
2025-07-08
Earliest release date
2026-05-10
Sampling location
Russia (Kostroma)
Isolate name
SPb_12080/25EVI/Kostroma/2025/RU
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-05-21 14:41
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2026-05-10
NCBI update date
2026-05-10
INSDC accession
PZ117054.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PZ117054.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-21 14:41:12 UTC
Date released
2026-05-21 14:55:20 UTC
Clade
Clade CV-A16
B1c
Genotype
Genotype
CV-A16
Alignment and QC
Total SNPs
1283
Length
5850 (78.9%)
Nucleotide mutations
Mutations called relative to the
U05876.1
reference
Substitutions
T
1461
A
G
1465
A
A
1467
C
C
1470
T
C
1471
T
T
1473
G
G
1482
A
G
1485
T
G
1494
A
C
1510
T
C
1513
A
C
1521
T
C
1524
T
G
1530
A
A
1542
T
A
1545
G
T
1554
C
T
1557
A
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
U05876.1
reference
Substitutions
2A
2A:
D
57
N
2A:
R
68
K
2A:
S
77
T
2A:
F
83
Y
2A:
V
102
M
2B
2B:
K
7
R
2B:
T
15
M
2B:
K
41
R
2B:
I
57
V
2B:
M
63
V
2B:
A
96
V
2C
2C:
N
23
S
2C:
K
41
R
2C:
I
228
V
2C:
R
268
K
2C:
S
271
T
2C:
V
303
I
2C:
Y
318
S
3A
3A:
P
3
H
3A:
R
9
K
3A:
D
39
E
3A:
I
61
V
3B
3B:
T
10
A
3B:
I
15
V
3C
3C:
I
56
V
3C:
E
61
D
3C:
I
86
V
3C:
N
93
T
3C:
S
95
T
3C:
A
96
G
3C:
V
157
I
3C:
S
177
G
3D
3D:
P
8
S
3D:
H
44
T
3D:
I
74
V
3D:
K
75
T
3D:
E
76
Q
3D:
S
93
N
3D:
Q
94
K
3D:
N
106
H
3D:
I
125
V
3D:
T
134
I
3D:
V
138
T
3D:
S
139
T
3D:
F
143
Y
3D:
I
165
L
3D:
A
190
T
3D:
I
205
V
3D:
N
213
D
3D:
T
216
V
Show more
VP1
VP1:
G
3
S
VP1:
A
11
T
VP1:
T
13
N
VP1:
S
14
N
VP1:
R
15
Q
VP1:
G
17
N
VP1:
A
19
S
VP1:
S
22
A
VP1:
E
26
L
VP1:
N
33
E
VP1:
E
36
S
VP1:
L
43
V
VP1:
Q
59
S
VP1:
E
61
K
VP1:
T
79
A
VP1:
M
119
L
VP1:
A
139
V
VP1:
I
179
V
Show more
VP2
VP2:
V
170
I
VP2:
I
215
L
VP3
VP3:
A
33
P
VP3:
R
41
H
VP3:
Q
59
K
VP3:
S
60
T
VP3:
V
85
A
VP3:
N
93
D
VP3:
G
141
N
VP3:
L
147
I
VP3:
I
169
V
VP3:
K
182
R
VP3:
D
183
A
VP3:
T
193
I
VP3:
S
238
T
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue